Groundwater flow and transport and potential sources of groundwater nitrates in the Ryukyu Limestone as a mixed flow aquifer in Okinawa Island, Japan

We investigated the groundwater flow and the transport and potential source of groundwater nitrates in the typical karst setting of the Ryukyu Limestone aquifer in the southern part of Okinawa Island, Japan. Analysis of groundwater hydrographs indicated that this is a ??mixed flow?? aquifer with the coexistence of slow diffuse flow in the matrices and rapid conduit flow in the caves and caverns. This relationship is indicated by the travel time of groundwater flow: 70?days in the matrices of the aquifer and 6?days through the caves and caverns. The conduit flow system was also confirmed by the distribution of relatively low concentrations of ²²²Rn near caverns. The sampling sites were categorized into upland field (UF) type and residential area (RA) type according to the land-use ratio on the upstream side with a 600-m influential radius, and cave and cavern (CC) type according to the hydrogeologic setting near two large caverns, even though the CC type should be categorized as the UF type from the viewpoint of land use. Cross plots of NO₃-N versus SO₄ ^2? showed that the predominant source of UF groundwater nitrates was chemical fertilizer. A difference was observed in average ??¹⁵N values between UF (8.9??) and RA (10.0??). On the other hand, the average ??¹⁵N value for CC (10.5??) was similar to that for RA, indicating that CC nitrates were not related to the surrounding land use. This phenomenon is considered as evidence that CC groundwater nitrates were carried by rapid groundwater flow through caves and caverns from residential areas located higher upstream compared to the influential areas. According to previous studies, animal and human waste was considered the predominant sources of RA and CC groundwater nitrogen. The contribution ratio of chemical fertilizer (R _CF) was calculated using mass balance equations under assumed predictability. There was a relatively high correlation between the rate of upland areas and of residential areas and R _CF. Average R _CF for UF, RA and CC was 41, 27, and 25%, respectively.     

Efficient bioethanol production from water hyacinth Eichhornia crassipes by both preparation of the saccharified solution and selection of fermenting yeasts

Although water hyacinth is an adventive aquatic plant that threatens the Japanese ecosystem, its high growth rate may be a benefit in terms of its potential as a raw material for the production of bioethanol. In our study, water hyacinth was saccharified with 3?% (v/v) sulfuric acid and subjected to cellulase treatments to determine optimum bioethanol production conditions. The original saccharified solution yielded both glucose at 5.3?±?0.2?g/l and reducing sugars at 9.7?±?0.1?g/l. Concentration of the saccharified solution under vacuum at 70?°C yielded both glucose at 21.5?±?2.9?g/l and reducing sugars at 33.3?±?2.1?g/l. An aquatic yeast Saccharomyces cerevisiae TY2 produced ethanol at 9.6?±?1.1?g/l from the concentrated saccharified solution. In comparison, Ogawa et al. (Afr J Microbiol Res 2:110?C113, 2008) reported that this yeast produced 0.90?g/l and that the production of bioethanol was about 11.2-fold lower than that obtained in our study. These results suggest that refinement of the saccharification process and application of the selected yeast could improve the efficiency of obtaining bioethanol from the water hyacinth.     

Soil depth and soil water regime in a catchment where tropical dry evergreen and deciduous forests coexist

In several areas in Northeast Thailand, evergreen and deciduous forests coexist under uniform climatic conditions. To identify the factors that determine the distribution of these different forest types, we compared soil depth and soil physical properties between evergreen and deciduous forests, and monitored soil moisture conditions for a year in both forest types at the Sakaerat Environmental Research Station. The soil was significantly deeper under the evergreen forests (mean 97 cm) than under the deciduous forest (mean 64 cm). The soil under the evergreen forests retained much more water throughout the year than the soil under the deciduous forest, and there was also a clear tendency for the evergreen forests to occur in ravine areas, regardless of soil depth. It is possible that the evergreen trees can maintain transpiration during the dry season on thicker soils or in ravine areas, whereas shallower soils cannot provide enough water for these trees to maintain their evapotranspiration during the dry period. From the present study, we showed that soil water availability could be a significant factor determining the distribution of the deciduous and evergreen forests in our catchments.     

Lymphocyte blastogenic responses to food antigens in cats showing clinical symptoms of food hypersensitivity

Three cats were diagnosed as having food hypersensitivity by food elimination and oral food provocation tests. Twelve allergenic food ingredients were identified by oral food provocation test in the 3 cats. Of the 12 food ingredients, 9 offending food antigens were shown to be positive in a lymphocyte stimulation test; however, none of them were positive in antigen-specific IgE testing, and only four food antigens were positive in intradermal testing. The stimulation indices in the lymphocyte stimulation tests for the 9 food ingredients were found to be decreased after the cats were fed elimination diets. The present study demonstrates that the lymphocyte stimulation test reflects an immunologic reaction involved in food hypersensitivity and can help identify allergenic food ingredients in feline food hypersensitivity.     

Prevalence of avian haematozoa in wild birds in a high-altitude forest in Japan

The infection dynamics of avian haematozoa, which includes the genera Plasmodium, Haemoproteus, and Leucocytozoon, are complicated by a variety of environmental factors and host-parasite interactions. In Japan, the prevalence of haematozoa in wild birds has recently been determined in several local areas. However, no information on the annual prevalence of avian haematozoa in a single study site has been reported. Here, we investigated the long-term infection dynamics of haematozoa in wild birds inhabiting a mountain forest of Japan. Blood samples were collected from 415 wild birds captured in the Chichibu mountains in Saitama Prefecture at an altitude of 1650 m between 2007 and 2010. All obtained samples were examined for haematozoan infection using nested polymerase chain reaction (PCR) of the cytochrome b (cytb) genes of haematozoa. A total of 62 out of 415 (14.9%) forest birds were PCR positive for haematozoa. Relatively high infection rates of Leucocytozoon were found among several bird species (Parus ater, 64.3%; Parus montanus, 81.8%) and may be due to the host preference of vector black flies and host nestling pattern in this forest. Phylogenetic analysis of amplified cytb sequences revealed for the first time that a variety of lineages of avian haematozoa are distributed among wild bird hosts in a high-altitude forest stand in Japan. Notably, significant seasonal changes of the prevalence of avian haematozoa were not observed; however, continuous investigation will likely provide detailed information on host-parasite interactions, including local environmental factors, that influence the dynamics of avian haematozoan infections.     

Variations in genes involved in fat metabolism and their association with ultrasonic and carcass traits in Japanese Black steers

Polymorphisms in genes involved in lipid metabolism have been reported to be associated with fatty acid composition of adipose tissue. However, the relationship of these polymorphisms with premortem ultrasonic traits is unknown. The objective of this study, therefore, was to assess the association between polymorphisms in fatty acid synthase, stearoyl‐coenzyme A desaturase (SCD), sterol regulatory element‐binding protein 1 (SREBP1), diacylglycerol acyltransferase 1, and nuclear receptor subfamily 1, group H, number 3 genes with ultrasonic and carcass traits in Japanese Black steers (n = 300) under progeny testing at the Livestock Improvement Association of Miyazaki. To have a comprehensive analysis of the association between the aforementioned genetic polymorphisms and ultrasonic traits, longitudinal measurements of ultrasonic traits were taken. Furthermore, the association of these genetic polymorphisms and carcass traits was evaluated. The polymorphisms in the SCD gene and SREBP1 were associated (P < 0.05) with some ultrasonic traits at multiple stages. To add to that, the polymorphisms were associated (P < 0.05) with some carcass traits. These findings suggest that the polymorphisms in SCD and SREBP1 are functional mutations or could be related to mutations that can aid in selection to improve some ultrasonic and carcass traits.     

Effects of inclusion levels of pelleted silvergrass (Miscanthus sinensis Andress.) in the diet on digestibility,chewing activity,ruminal fermentation and blood metabolites in breeding Japanese Black cows

To examine the effects of inclusion levels of pelleted silvergrass (PS) in the diet on digestibility, ruminal fermentation and nutrient status of breeding Japanese Black cows, four cows were allotted to a 4 × 4 Latin square design experiment. Treatments were control fed a diet consisting of 89.4% Sudangrass hay and 10.6% soybean meal on a dry matter (DM) basis, and PS18, PS27 and PS45 fed the diet replaced with 18%, 27% and 45% of control with PS, respectively. The total digestible nutrients (TDN) content of PS was 45.6% on a DM basis. The TDN intakes were significantly decreased by increasing PS level in the diet (P < 0.05), but were higher than the TDN requirement of maintenance cows in all treatments. The total chewing time was decreased significantly by increasing PS level in the diets (P < 0.05). However, the pH and concentration of volatile fatty acid in the ruminal fluid and serum metabolite concentrations were not significantly different among the treatments. The results suggested that including PS up to 45% in the diet did not have adverse effects on the ruminal fermentation and nutrient status in breeding Japanese Black cows at the maintenance stage.     

Soil salinity dynamics in irrigated fields and its effects on paddy‐based rotation systems in southern Kazakhstan

Agricultural production in southern Kazakhstan has experienced significant economic difficulty since the 1980s, accelerating agronomic problems including the salinization of irrigated fields. A thorough understanding of the up‐to‐date situation of soil salinization and its effects on cropping systems is necessary in order to establish sustainable agricultural systems with avoiding land degradation for the region. This study examined the relationships between soil salinity, crop yield and affecting factors including local terrain for two farms. Both farms are characterised by a gentle slope, flat area and localised depressions. Most of the paddy fields showed wash‐out of salts during the irrigation period except in waterlogged fields situated in depressions. Rice yield was adversely affected by the remaining soil salinity, deep ponding water and insufficient drainage capacity in the lower part of the irrigation system. Salt accumulation in the upland fields appeared to increase with cropping years, and was associated with groundwater depth that became shallower at the lower parts of the irrigation systems, adversely affecting the crop growth in most fields. Since the cropping patterns had recently changed in the region, each pattern was compared against the recommendation of this study. Most patterns were concluded to be potentially effective for preventing soil salinization if conducted under an optimum economic and social system. Copyright © 2007 John Wiley & Sons, Ltd.     

Molecular cloning of horse Hsp90 cDNA and its comparative analysis with other vertebrate Hsp90 sequences

Heat shock protein 90 (Hsp90), a molecular chaperone, is ubiquitous and involved in numerous cellular processes. To contribute to the relatively small collection of vertebrate Hsp90 sequences in the gene data bank, we cloned and sequenced horse (Equus caballus) Hsp90 alpha and beta cDNAs. This enabled identification of horse-specific primers for development of a convenient PCR-based method that could monitor horse stress tolerance. We analyzed the sequence data comparatively and phylogenetically with other Hsp90 cDNA sequences, and identified vertebrate-specific and isoform-specific conserved regions to facilitate future molecular investigations of Hsp90 functions. We found 4 highly conserved regions to vertebrate Hsp90 exclusively and 27 amino acids conserved among but differing between Hsp90 alpha and Hsp90 beta sequences. Protein-based phylogenetic trees revealed high conservation between mammal species within Hsp90 alpha and beta clusters. Comparison of nucleotide and amino acid substitution levels suggests that horse Hsp90 beta has undergone strong purifying selection, while rat Hsp90 beta and hamster Hsp90 alpha have been positively selected. Surprisingly, fish Hsp90 alpha genes clearly clustered with Hsp90 beta genes, and no distinct placement of fish Hsp90 alpha protein was found. The Hsp90 alpha isoform is apparently the result of beta gene duplication. Our results highlight the importance of organism- and isoform-specific Hsp90 functional analyses in describing the role of Hsp90 in cells.